PPDB

The Plant Proteome Database

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AT5G50870.1   ubiquitin-conjugating enzyme 27

Lab Annot. UBC27 (UBIQUITIN-CONJUGATING ENZYME 27); ubiquitin-protein ligase
Mapman: 29.5.11 protein.degradation.ubiquitin
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G50870.2 11Arabidopsis thaliana2E-140203949411 (2)_
AT5G41700.4 11Arabidopsis thaliana1E-40144466526 (19)_
AT1G78870.2 11Arabidopsis thaliana6E-40144466392 (40)_
Os01g70140.1 7Oryza sativa6E-9019568821 (1)_
Os01g46926.1 7Oryza sativa6E-4014447655 (5)_
Os09g12230.1 7Oryza sativa2E-3914447630 (0)_
GRMZM2G134176_P01 3.21Zea mays4E-9019568832 (1)_
v1_GRMZM2G134176_P01 4a53Zea mays4E-9019568833 (3)_
Zm00001eb363890_P003 agpv5Zea mays4E-9019568830 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Prok-E2_B(1) RWD(1) UBA(1) UEV(1) UQ_con(1)
TargetP: Cytoplasm (Class 2 C0.202; M0.141; S0.051; _0.851)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 192 aa (-cTP 168)
Molecular Weight 21.25 kDA(-cTP )
PI 5.00(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2262Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

17407188(cotyledon)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help