PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G50600.1   hydroxysteroid dehydrogenase 1
Lab Annot. hydroxysteroid dehydrogenase 1
Mapman: 26.22 misc.short chain dehydrogenase/reductase (SDR)
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G50700.1 11Arabidopsis thaliana034910010049 (38)S
AT5G50770.1 11Arabidopsis thaliana2E-10632946640 (0)S
AT5G50590.1 11Arabidopsis thaliana5E-9530248650 (0)S
Os12g27830.1 7Oryza sativa1E-11934948670 (0)S
Os04g32070.1 7Oryza sativa9E-11734647671 (1)_
Os11g30560.1 7Oryza sativa9E-10134844622 (2)S
GRMZM2G006119_P01 3.21Zea mays2E-12134650660 (0)_
GRMZM2G006119_P03 3.21Zea mays2E-12134650660 (0)_
Zm00001eb328980_P001 agpv5Zea mays2E-12134650660 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: adh_short(1) adh_short_C2(1) Herpes_TK_C(2) KR(1) NAD_binding_10(1)
TargetP: Secreted (Class 2 C0.001; M0.071; S0.968; _0.210)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 349 aa (-cTP 299)
Molecular Weight 39.09 kDA(-cTP )
PI 5.92(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2270Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2274Detail       seedlings [A. thaliana] total tissue wild-type
2275Detail       seedlings [A. thaliana] total tissue wild-type
2291Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
18599647(seed proteome)
19562800(oil body mature seeds (Brassica napus))
20702726(mature seeds)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help