PPDB

PPDB	The Plant Proteome Database

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AT5G50280.1 Pentatricopeptide repeat (PPR) superfamily protein

Lab Annot.

Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

plastid nucleoid (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G02860.1 11 Arabidopsis thaliana 4E-48 462 27 47 0 (0) C
AT5G02860.5 11 Arabidopsis thaliana 4E-48 462 27 47 0 (0) C
AT5G02860.3 11 Arabidopsis thaliana 4E-48 462 27 47 0 (0) C
Os05g22870.1 7 Oryza sativa 0 545 54 72 0 (0) C
Os03g06910.1 7 Oryza sativa 1E-53 421 28 47 0 (0) M
Os10g35240.1 7 Oryza sativa 1E-49 393 29 48 0 (0) M
Zm00001eb154110_P002 agpv5 Zea mays 0 551 53 72 0 (0) M
GRMZM2G012174_P01 3.21 Zea mays 0 551 53 72 14 (14) M
v1_GRMZM2G012174_P01 4a53 Zea mays 0 551 53 72 5 (5) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	bacHORMA_2(3) BKACE(3) Clathrin(2) Mtf2(2) Phage_ABA_S(2) PMBR(2) PPR(11) PPR_1(
TargetP:	Chloroplast (Class 2 C0.852; M0.129; S0.048; _0.006)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	723 aa (-cTP 679)
Molecular Weight	82.17 kDA(-cTP 77.18)
PI	6.84(-cTP 6.11)

Experimental Evidence

Expand

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19334764(plasma membrane (cell culture))

Comparative Proteomics Data