PPDB

PPDB	The Plant Proteome Database

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AT5G50230.1 Transducin/WD40 repeat-like superfamily protein

Lab Annot.

ATG16l - (ATG8/12 conjugation pathway)
Mapman: 29.5.2 protein.degradation.autophagy

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G49660.1 11 Arabidopsis thaliana 2E-27 253 26 50 0 (0) C
AT5G64730.1 11 Arabidopsis thaliana 7E-26 297 25 47 0 (0) _
AT2G43770.1 11 Arabidopsis thaliana 1E-22 278 26 45 4 (2) C
Os03g53510.1 6 Oryza sativa 0 513 54 74 0 (0) _
Os03g53510.2 7 Oryza sativa 0 513 54 74 0 (0) M
Os02g33860.1 7 Oryza sativa 2E-28 299 25 49 0 (0) M
Zm00001eb057050_P001 agpv5 Zea mays 0 512 53 74 0 (0) _
Zm00001eb057050_P002 agpv5 Zea mays 0 512 53 74 0 (0) M
GRMZM2G078252_P02 3.21 Zea mays 0 512 53 74 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC4_WD40(5) ATG16(1) Cep57_CLD_2(2) Crescentin(1) Cytochrom_D1(2) DUF2120(2)
TargetP:	Cytoplasm (Class 3 C0.171; M0.178; S0.040; _0.705)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	509 aa (-cTP 493)
Molecular Weight	56.43 kDA(-cTP )
PI	5.84(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data