PPDB

PPDB	The Plant Proteome Database

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AT5G49980.1 auxin F-box protein 5

Lab Annot.

ubiquitin-protein ligase F-box 5 (AFB5)
Mapman: 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G24390.1 11 Arabidopsis thaliana 0 623 78 87 0 (0) C
AT4G24390.2 11 Arabidopsis thaliana 0 623 78 87 0 (0) C
AT1G12820.1 11 Arabidopsis thaliana 0 580 51 67 0 (0) _
Os02g52230.1 7 Oryza sativa 0 574 63 79 0 (0) C
Os03g08850.1 7 Oryza sativa 0 623 53 69 0 (0) _
Os11g27450.1 6 Oryza sativa 0 579 53 71 0 (0) S
v1_GRMZM2G427529_P01 4a53 Zea mays 0 614 60 76 0 (0) C
Zm00001eb255540_P002 agpv5 Zea mays 0 614 60 76 0 (0) C
Zm00001eb255540_P001 agpv5 Zea mays 0 614 60 76 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	F-box(1) F-box-like(2) F-box_5(1) LRR_6(5) Transp_inhibit(3)
TargetP:	Cytoplasm (Class 2 C0.225; M0.053; S0.014; _0.856)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	619 aa (-cTP 550)
Molecular Weight	69.32 kDA(-cTP )
PI	5.14(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1350	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 3)
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)

Comparative Proteomics Data