PPDB

PPDB	The Plant Proteome Database

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AT5G49960.1 ion channel protein

Lab Annot.

unknown protein DUF1012 domain
Mapman: 35.2 not assigned.unknown

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G49960.2 11 Arabidopsis thaliana 0 633 99 100 0 (0) M
AT5G49960.3 11 Arabidopsis thaliana 0 632 100 100 0 (0) M
AT5G02940.1 11 Arabidopsis thaliana 7E-51 671 24 47 143 (122) M
Os01g64980.1 7 Oryza sativa 0 685 77 87 0 (0) C
Os01g64980.2 7 Oryza sativa 0 683 77 87 0 (0) C
Os03g62650.1 7 Oryza sativa 0 678 68 82 0 (0) C
v1_GRMZM2G099160_P01 4a53 Zea mays 0 711 65 79 0 (0) C
GRMZM2G099160_P01 3.21 Zea mays 0 711 65 79 0 (0) C
v1_GRMZM2G099160_P03 4a53 Zea mays 0 639 66 80 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	7tm_1(1) Castor_Poll_mid(4) TrkA_C(2)
TargetP:	Mitochondria (Class 2 C0.027; M0.823; S0.008; _0.218)
Predotar:
Subcel. Location:
TM-HMM prediction:	3 TMs
Aramemnon:	3 TMs
TAT position:
Length	824 aa (-cTP 814)
Molecular Weight	92.24 kDA(-cTP )
PI	5.52(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)

Comparative Proteomics Data