PPDB

 The Plant Proteome Database

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AT5G49940.1   NIFU-like protein 2
Lab Annot. CnfU-V - 2Fe-2S assembly PSI & Fd (also NFU-2)
Mapman: 29.8.1* protein assembly and cofactor ligation.Fe-S assembly
Curated Location plastid stroma (Pubmed: 23198870 15031412 15361144 18431481 )

TAIR curated location: chloroplast15031412,12553879
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G49940.2 11Arabidopsis thaliana6E-12317410010014 (8)C
AT4G25910.1 11Arabidopsis thaliana2E-76198617519 (15)C
AT4G01940.1 11Arabidopsis thaliana1E-24177345550 (34)C
Os11g07916.1 7Oryza sativa4E-9619771830 (0)C
Os06g47940.1 7Oryza sativa2E-8015276902 (2)C
Os12g07700.1 7Oryza sativa4E-7718264800 (0)C
Zm00001eb201220_P001 agpv5Zea mays6E-9517777880 (0)C
v1_GRMZM2G089317_P01 4a53Zea mays2E-9417079908 (8)C
GRMZM2G089317_P01 3.21Zea mays2E-94170799010 (10)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: NifU(2) SRP54_N(3)
TargetP: Chloroplast (Class 1 C0.926; M0.044; S0.002; _0.086)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 235 aa (-cTP 219)
Molecular Weight 25.62 kDA(-cTP 23.91)
PI 5.29(-cTP 5.16)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
303Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
869Detail       leaf [A. thaliana] chloroplast stromawild-type
870Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2310Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help