PPDB

PPDB	The Plant Proteome Database

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AT5G49930.1 zinc knuckle (CCHC-type) family protein

Lab Annot.

zinc knuckle (CCHC-type) protein
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
Os12g37720.1 7 Oryza sativa 0 1150 63 76 14 (14) M
v1_GRMZM2G038516_P02 4a53 Zea mays 0 1150 62 75 4 (4) _
Zm00001eb136770_P001 agpv5 Zea mays 0 1188 61 73 0 (0) _
v1_GRMZM2G038516_P01 4a53 Zea mays 0 1188 61 73 4 (4) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF5590(1) FbpA(2) NFACT-C(2) NFACT-R_1(1) NFACT-R_2(1) zf-CCHC(1) zf-CCHC_5(1)
TargetP:	Cytoplasm (Class 4 C0.044; M0.137; S0.227; _0.604)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1080 aa (-cTP 1055)
Molecular Weight	121.43 kDA(-cTP )
PI	6.86(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)

Comparative Proteomics Data