PPDB

 The Plant Proteome Database

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AT5G49820.1   root UVB sensitive protein (Protein of unknown function%2C DUF647)
Lab Annot. EMB1879 (EMBRYO DEFECTIVE 1879)
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G31190.2 11Arabidopsis thaliana3E-5136034531 (1)_
AT2G31190.1 11Arabidopsis thaliana4E-5136034531 (1)_
AT3G45890.1 11Arabidopsis thaliana2E-3843325470 (0)C
Os05g34650.1 7Oryza sativa045667790 (0)M
Os01g66350.1 7Oryza sativa044367790 (0)_
Os05g34650.2 7Oryza sativa043766790 (0)M
v1_GRMZM2G081188_P01 4a53Zea mays050163755 (5)M
GRMZM5G833124_P01 3.21Zea mays044569804 (4)M
Zm00001eb288290_P001 agpv5Zea mays044569800 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF647(1) PDZ_5(1)
TargetP: Cytoplasm (Class 5 C0.470; M0.090; S0.040; _0.491)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 497 aa (-cTP 466)
Molecular Weight 54.63 kDA(-cTP )
PI 8.79(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help