PPDB

The Plant Proteome Database

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AT5G49540.1   Rab5-interacting family protein

Lab Annot. unknown protein DUF786 domain
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G49540.2 11Arabidopsis thaliana1E-7010798990 (0)_
Os01g49026.1 7Oryza sativa3E-4411260765 (5)_
Os01g49026.2 7Oryza sativa5E-3810557745 (5)_
Os01g49026.3 7Oryza sativa5E-329655725 (5)_
GRMZM2G057508_P01 3.21Zea mays4E-4410165798 (8)_
Zm00001eb295100_P001 agpv5Zea mays4E-4410165790 (0)_
v1_GRMZM2G057508_P01 4a53Zea mays4E-4410165792 (2)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ATP-synt_I(2) Rab5ip(1)
TargetP: Cytoplasm (Class 2 C0.046; M0.043; S0.251; _0.918)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 114 aa (-cTP 53)
Molecular Weight 12.68 kDA(-cTP )
PI 5.58(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1

* For details about the exprimental sources click here.

Published Proteomics Data

19334764(plasma membrane (cell culture))
21988472(vacuole (unfiltered data))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help