PPDB

 The Plant Proteome Database

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AT5G49215.2   Pectin lyase-like superfamily protein
Lab Annot. glycoside hydrolase family 28 protein / polygalacturonase (pectinase) protein
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G49215.1 11Arabidopsis thaliana044999991 (1)S
AT3G06770.2 11Arabidopsis thaliana0446748414 (1)S
AT3G06770.5 11Arabidopsis thaliana044474840 (0)S
Os11g43750.1 7Oryza sativa1E-17140158760 (0)M
Os12g36810.1 7Oryza sativa7E-16039657750 (0)S
Os07g14160.1 7Oryza sativa3E-15243251680 (0)S
GRMZM2G113815_P01 3.21Zea mays6E-17039858740 (0)S
Zm00001eb410050_P001 agpv5Zea mays6E-17039858740 (0)S
v1_GRMZM2G113815_P01 4a53Zea mays6E-17039858740 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Beta_helix(2) DUF5441(1) Glyco_hydro_28(1) Pectate_lyase_3(2)
TargetP: Secreted (Class 3 C0.031; M0.197; S0.624; _0.122)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 447 aa (-cTP 379)
Molecular Weight 48.57 kDA(-cTP )
PI 5.40(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 21413152(Xylem-sap (BrassicaOleracea))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help