PPDB

PPDB	The Plant Proteome Database

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AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein

Lab Annot.

PPR protein LPA66 - edits psbF
Mapman: 27.1.5* RNA.processing.editing

Curated Location

plastid stroma (Pubmed: 23198870 19448041 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G66520.1 11 Arabidopsis thaliana 0 618 43 62 4 (4) _
AT5G06540.1 11 Arabidopsis thaliana 2E-177 629 41 61 0 (0) S
AT1G08070.1 11 Arabidopsis thaliana 9E-174 730 39 58 0 (0) C
Os03g60690.1 7 Oryza sativa 4E-164 559 42 62 0 (0) C
Os07g02280.1 7 Oryza sativa 7E-159 618 39 58 0 (0) C
Os07g44299.1 7 Oryza sativa 4E-158 537 45 62 0 (0) _
GRMZM2G481373_P01 3.21 Zea mays 3E-174 703 39 56 0 (0) C
v1_GRMZM2G481373_P01 4a53 Zea mays 3E-174 703 39 56 0 (0) C
Zm00001eb424980_P001 agpv5 Zea mays 3E-174 703 39 56 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DYW_deaminase(1) PPR(12) PPR_1(8) PPR_2(10) PPR_3(8) PPR_long(3) RRM_5(1)
TargetP:	Chloroplast (Class 2 C0.850; M0.072; S0.039; _0.165)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	646 aa (-cTP 593)
Molecular Weight	73.26 kDA(-cTP 67.55)
PI	6.69(-cTP 6.32)

Experimental Evidence

Expand

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data