PPDB

PPDB	The Plant Proteome Database

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AT5G48900.1 Pectin lyase-like superfamily protein

Lab Annot.

pectate lyase protein
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G07010.1 11 Arabidopsis thaliana 0 417 85 95 21 (11) S
AT3G07010.2 11 Arabidopsis thaliana 0 368 86 95 0 (0) M
AT4G13710.1 11 Arabidopsis thaliana 0 390 78 87 0 (0) S
Os04g05050.1 7 Oryza sativa 0 382 81 89 0 (0) S
Os04g05050.2 7 Oryza sativa 0 368 82 89 0 (0) _
Os10g31910.1 7 Oryza sativa 2E-177 388 62 75 0 (0) S
Zm00001eb420010_P002 agpv5 Zea mays 0 382 80 88 0 (0) C
v1_GRMZM2G412207_P02 4a53 Zea mays 0 369 81 89 0 (0) _
v1_GRMZM2G131912_P01 4a53 Zea mays 0 382 81 89 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) NosD(1) Pectate_lyase_4(1)
TargetP:	Secreted (Class 1 C0.029; M0.035; S0.939; _0.060)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	417 aa (-cTP 394)
Molecular Weight	46.73 kDA(-cTP )
PI	8.89(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
544	Detail								leaf [A. thaliana]	stroma (FPLC) <600 kDa (LMA)	wild-type
1535	Detail								leaf [A. thaliana]		wild-type
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

17293592(total seedlings û light and dark grown)
19334764(plasma membrane (cell culture))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data