PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G48560.1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Lab Annot. basic helix-loop-helix (bHLH) DNA-binding protein
Mapman: 27.3.6 RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G48560.2 11Arabidopsis thaliana04661001000 (0)_
AT3G07340.1 11Arabidopsis thaliana6E-16052055620 (0)C
AT3G07340.2 11Arabidopsis thaliana8E-14947956630 (0)C
Os01g68700.2 7Oryza sativa8E-6949738510 (0)_
Os01g68700.1 7Oryza sativa1E-6747338520 (0)_
Os08g41320.1 7Oryza sativa1E-5122849610 (0)_
Zm00001eb143520_P002 agpv5Zea mays1E-5742538490 (0)_
v1_GRMZM2G180406_P02 4a53Zea mays1E-5742538490 (0)_
v1_GRMZM2G180406_P01 4a53Zea mays1E-5742538490 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: HLH(1)
TargetP: Cytoplasm (Class 2 C0.185; M0.102; S0.014; _0.867)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 498 aa (-cTP 431)
Molecular Weight 54.88 kDA(-cTP )
PI 5.95(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

20813957(SUMO proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help