PPDB

 The Plant Proteome Database

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AT5G48440.1   FAD-dependent oxidoreductase family protein
Lab Annot. oxidoreductase - Thi4 family
Mapman: 18.2 Co-factor and vitamine metabolism.thiamine
Curated Location plastid stroma (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G48440.2 11Arabidopsis thaliana03971001005 (5)C
AT5G48440.3 11Arabidopsis thaliana034799990 (0)C
Os09g33900.1 7Oryza sativa1E-16042755700 (0)C
Os09g33900.2 7Oryza sativa3E-13337452690 (0)_
Zm00001eb318320_P005 agpv5Zea mays6E-15140852700 (0)C
GRMZM2G081048_P06 3.21Zea mays8E-15140852704 (4)C
Zm00001eb318320_P003 agpv5Zea mays8E-15140852700 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DAO(1) FAD_binding_2(2) HI0933_like(1) Lycopene_cycl(1) NAD_binding_8(1) Pyr_red
TargetP: Chloroplast (Class 2 C0.931; M0.170; S0.021; _0.012)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 459 aa (-cTP 422)
Molecular Weight 49.80 kDA(-cTP 45.69)
PI 6.33(-cTP 5.82)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
2114Detail       leaf [A. thaliana] Stroma stromawt
2303Detail        [A. thaliana] Clp C1 WT
2318Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 20423899(chloroplast)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help