PPDB

PPDB	The Plant Proteome Database

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AT5G48050.1 Copia-like polyprotein/retrotransposon

Lab Annot.

Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G34070.1 11 Arabidopsis thaliana 3E-71 267 44 62 0 (0) _
Os11g35740.1 7 Oryza sativa 3E-43 205 35 63 0 (0) C
Os10g18860.1 7 Oryza sativa 5E-43 205 34 62 0 (0) C
Os09g17020.1 7 Oryza sativa 3E-42 194 35 63 0 (0) C
GRMZM6G078635_P01 3.21 Zea mays 6E-27 175 32 52 0 (0) C
GRMZM2G110421_P01 3.21 Zea mays 9E-20 198 32 49 0 (0) _
GRMZM2G082112_P01 3.21 Zea mays 3E-08 161 24 47 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Retrotran_gag_2(1) Retrotrans_gag(2)
TargetP:	Cytoplasm (Class 4 C0.051; M0.087; S0.437; _0.741)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	369 aa (-cTP 363)
Molecular Weight	42.54 kDA(-cTP )
PI	7.74(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19334764(plasma membrane (cell culture))

Comparative Proteomics Data