PPDB

PPDB	The Plant Proteome Database

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AT5G47760.1 2-phosphoglycolate phosphatase 2

Lab Annot.

phosphoglycolate phosphatase, putative
Mapman: 35.1 not assigned.no ontology

Curated Location

plastid stroma (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G47760.2 11 Arabidopsis thaliana 8E-149 210 96 97 0 (0) _
AT5G36700.1 11 Arabidopsis thaliana 6E-139 295 66 82 619 (426) C
AT5G36790.1 11 Arabidopsis thaliana 6E-139 295 66 82 619 (426) C
Os09g08660.1 7 Oryza sativa 4E-151 295 67 83 2 (2) _
Os04g41340.1 7 Oryza sativa 1E-137 288 67 81 33 (33) C
Os12g23150.1 7 Oryza sativa 1E-35 123 52 70 0 (0) C
Zm00001eb064870_P001 agpv5 Zea mays 3E-144 295 64 81 0 (0) _
v1_GRMZM2G417843_P01 4a53 Zea mays 3E-144 295 64 81 0 (0) _
GRMZM2G417843_P01 3.21 Zea mays 3E-144 295 64 81 3 (1) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF853(1) HAD_2(3) Hydrolase(1) Hydrolase_6(1) Hydrolase_like(1) PGP_phosphatase
TargetP:	Cytoplasm (Class 5 C0.076; M0.053; S0.449; _0.511)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	301 aa (-cTP 210)
Molecular Weight	33.01 kDA(-cTP )
PI	5.05(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
339	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
544	Detail								leaf [A. thaliana]	stroma (FPLC) <600 kDa (LMA)	wild-type
874	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1871	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1876	Detail								Total leaf [A. thaliana]	total soluble	wild-type
1938	Detail								leaf [A. thaliana]	chloroplast	Prep1_Prep2
1987	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
1988	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
2031	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2032	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2033	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2034	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2037	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2038	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2039	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2040	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2041	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and icp55c-3
2076	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2083	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2087	Detail								Total leaf [A. thaliana]	total soluble	wild-type
2088	Detail								Total leaf [A. thaliana]	total soluble	wild-type
2317	Detail								leaf [A. thaliana]	PG plastoglobule
2321	Detail								leaf [A. thaliana]

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)
19423572(stroma chloroplast (wt and clpr2-1))
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data

Expr*	Source	Tech.	Spot	PepSeq	ChargeState(z)	AreaRatio	Ambiguity	Tissue	Sample from
180_181	clpr2-1 cICAT - exp1 / wt cICAT - exp1	cICAT	2	ENPGCLFIATNR + ICAT_l / ENPGCLFIATNR + ICAT_h	2	0.60		leaf [A. thaliana]	chloroplast stroma