PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G47610.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G17245.1 11 Arabidopsis thaliana 4E-57 155 58 72 0 (0) _
AT1G49230.1 11 Arabidopsis thaliana 3E-28 130 43 60 0 (0) _
AT3G10910.1 11 Arabidopsis thaliana 3E-28 144 40 53 0 (0) _
Os04g34230.1 7 Oryza sativa 4E-29 131 42 61 0 (0) C
Os02g33720.1 7 Oryza sativa 2E-28 149 37 54 0 (0) _
Os11g02424.1 7 Oryza sativa 3E-22 141 36 51 0 (0) C
GRMZM2G059110_P01 3.21 Zea mays 4E-31 131 41 59 0 (0) _
v1_GRMZM2G059110_P01 4a53 Zea mays 4E-31 131 41 59 0 (0) _
v1_GRMZM2G451308_P01 4a53 Zea mays 2E-27 140 40 53 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF3112(1) FANCL_C(1) Oxidored_q2(1) PHD(1) Prok-RING_1(2) Prok-RING_4(1) RINGv(
TargetP:	Chloroplast (Class 4 C0.598; M0.057; S0.075; _0.257)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	166 aa (-cTP 152)
Molecular Weight	17.96 kDA(-cTP 16.53)
PI	5.57(-cTP 5.56)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data