PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G47400.1   sphingomyelin phosphodiesterase

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os10g41120.1 7Oryza sativa9E-10961538560 (0)_
Zm00001eb000330_P001 agpv5Zea mays6E-15279538560 (0)_
GRMZM2G026639_P01 3.21Zea mays6E-15279538560 (0)_
v1_GRMZM2G026639_P01 4a53Zea mays6E-15279538567 (7)_

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: mit_SMPDase(3)
TargetP: Secreted (Class 3 C0.003; M0.163; S0.637; _0.010)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 862 aa (-cTP 803)
Molecular Weight 97.57 kDA(-cTP )
PI 8.52(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help