PPDB

PPDB	The Plant Proteome Database

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AT5G47010.1 RNA helicase

Lab Annot.

LBA1/UPF1 (LOW-LEVEL BETA-AMYLASE 1); RNA helicase
Mapman: 27.1.2 RNA.processing.RNA helicase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G03270.1 11 Arabidopsis thaliana 1E-55 447 33 51 3 (2) _
AT4G15570.2 11 Arabidopsis thaliana 3E-51 426 34 51 0 (0) _
AT4G15570.4 11 Arabidopsis thaliana 3E-51 426 34 51 0 (0) _
Os07g31340.1 7 Oryza sativa 0 1006 82 88 22 (22) _
Os07g31340.2 7 Oryza sativa 0 1006 81 88 22 (22) _
Os07g31340.3 7 Oryza sativa 0 901 80 87 3 (3) _
Zm00001eb105540_P001 agpv5 Zea mays 0 1253 77 84 0 (0) _
Zm00001eb105540_P002 agpv5 Zea mays 0 1253 77 84 0 (0) _
Zm00001eb322020_P005 agpv5 Zea mays 0 1263 75 82 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA(1) AAA_10(1) AAA_11(2) AAA_12(1) AAA_16(1) AAA_19(1) AAA_22(1) AAA_30(1) ATP
TargetP:	Cytoplasm (Class 1 C0.106; M0.066; S0.035; _0.942)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1254 aa (-cTP 1236)
Molecular Weight	136.87 kDA(-cTP )
PI	6.04(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1423	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1535	Detail								leaf [A. thaliana]		wild-type
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2236	Detail								seedlings [A. thaliana]	total tissue	gfs9
2237	Detail								seedlings [A. thaliana]	total tissue	gfs9
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2239	Detail								seedlings [A. thaliana]	total tissue	gfs9
2240	Detail								seedlings [A. thaliana]	total tissue	gfs9
2241	Detail								seedlings [A. thaliana]	total tissue	gfs9
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9
2289	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2297	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2304	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)
21515685(GreenCut2)

Comparative Proteomics Data