PPDB

 The Plant Proteome Database

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AT5G46860.1   Syntaxin/t-SNARE family protein
Lab Annot. syntaxin 22 (SYP22) (VAM3) - dual location vacuole & ER
Mapman: 31.4 cell.vesicle transport
Curated Location ER (Pubmed: 15546360 17602189 17259264 16262709 15342965 12354913 12081650 )
vacuole (Pubmed: 15546360 17602189 17259264 16262709 15342965 12354913 12081650 )

TAIR curated location: trans-Golgi network transport vesicle & late endosome & vacuole (sensu Magnoliophyta) & vacuolar membrane (sensu Magnoliophyta)16306062,11115874,9305917
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G17730.2 11Arabidopsis thaliana4E-12626077840 (0)M
AT4G17730.1 11Arabidopsis thaliana2E-12524581860 (0)M
AT5G16830.1 11Arabidopsis thaliana7E-10926861780 (0)C
Os01g15110.1 7Oryza sativa2E-12426869783 (3)_
Os02g47440.1 7Oryza sativa1E-8526154730 (0)M
Os02g47440.3 7Oryza sativa3E-5216059760 (0)_
GRMZM2G017329_P01 3.21Zea mays3E-124270677811 (11)_
Zm00001eb333570_P001 agpv5Zea mays3E-12427067780 (0)_
v1_GRMZM2G017329_P01 4a53Zea mays3E-12427067784 (3)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Amnionless(1) Histone_HNS(1) MCPsignal(3) SNARE(1) Spc7(1) Spore_III_AB(3) Synap
TargetP: Mitochondria (Class 5 C0.190; M0.537; S0.016; _0.382)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 268 aa (-cTP 240)
Molecular Weight 29.48 kDA(-cTP )
PI 6.01(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
356Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1414Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR2 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1420Detail        [A. thaliana]  
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 14760709(Vacuolar proteome)
15539469(vacuole)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21325567(root-proteome (wt & det3))
20843791(DRM-enriched plasmamembrane)
21173025(root proteome)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data

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