PPDB

The Plant Proteome Database

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AT5G46830.1   calcium-binding transcription factor NIG1

Lab Annot.
Mapman: 27.3.6 RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G32640.1 11Arabidopsis thaliana3E-16462048580 (0)_
AT4G17880.1 11Arabidopsis thaliana1E-11458340570 (0)_
AT5G46760.1 11Arabidopsis thaliana1E-5823250670 (0)_
Os10g42430.1 7Oryza sativa2E-5526844602 (2)_
Os01g50940.1 7Oryza sativa2E-3549529420 (0)_
Os09g34330.1 7Oryza sativa3E-2819138510 (0)C
Zm00001eb024330_P001 agpv5Zea mays1E-5226742610 (0)_
GRMZM2G001930_P01 3.21Zea mays1E-5226742610 (0)_
v1_GRMZM2G001930_P01 4a53Zea mays1E-5226742610 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: bHLH-MYC_N(2) HLH(1) TcpS(1)
TargetP: Cytoplasm (Class 3 C0.261; M0.040; S0.168; _0.709)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 511 aa (-cTP 499)
Molecular Weight 57.35 kDA(-cTP )
PI 5.79(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help