PPDB

The Plant Proteome Database

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AT5G46700.1   Tetraspanin family protein

Lab Annot. TET1/TRN2 (TETRASPANIN2)
Mapman: 33.99 development.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G19580.1 11Arabidopsis thaliana6E-9026951690 (0)S
AT4G28050.1 11Arabidopsis thaliana5E-7825844600 (0)S
AT2G23810.1 11Arabidopsis thaliana2E-76263426215 (15)S
Os03g01012.1 7Oryza sativa7E-10527456730 (0)S
ChrSy.fgenesh.mRNA.81 7Oryza sativa2E-9127251670 (0) 
Os08g34460.1 7Oryza sativa6E-8026345601 (1)S
Zm00001eb404540_P001 agpv5Zea mays1E-10627252700 (0)S
Zm00001eb313460_P001 agpv5Zea mays1E-8627146640 (0)S
GRMZM2G041175_P01 3.21Zea mays1E-8627146642 (2)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: COX2_TM(2) DUF2207(2) FA_desaturase(1) Tetraspanin(1)
TargetP: Secreted (Class 3 C0.001; M0.014; S0.922; _0.463)
Predotar:
Subcel. Location:
TM-HMM prediction: 4 TMs
Aramemnon: 4 TMs
TAT position:
Length 269 aa (-cTP 266)
Molecular Weight 30.29 kDA(-cTP )
PI 8.36(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
21533090(plasmodesmata-crude)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help