PPDB

 The Plant Proteome Database

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AT5G46630.1   Clathrin adaptor complexes medium subunit family protein
Lab Annot. clathrin adaptor complexes medium subunit protein
Mapman: 29.3.4.99 protein.targeting.secretory pathway.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G46630.2 11Arabidopsis thaliana041310010021 (13)_
AT1G60780.1 11Arabidopsis thaliana1E-125440426287 (25)M
AT1G10730.1 11Arabidopsis thaliana4E-12444042623 (3)M
Os02g46510.1 7Oryza sativa043894974 (4)_
Os01g50770.1 7Oryza sativa2E-12244141612 (2)M
Os05g46550.1 7Oryza sativa3E-12244241621 (1)M
Zm00001eb251180_P001 agpv5Zea mays043894970 (0)_
GRMZM2G331032_P02 3.21Zea mays0438949749 (5)_
v1_GRMZM2G331032_P01 4a53Zea mays043694972 (2)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Adap_comp_sub(1) Clat_adaptor_s(1)
TargetP: Cytoplasm (Class 5 C0.015; M0.360; S0.121; _0.503)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 438 aa (-cTP 365)
Molecular Weight 49.32 kDA(-cTP )
PI 9.27(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2242Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2297Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 17317660(Plasma Membrane proteome)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help