PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G46630.1   Clathrin adaptor complexes medium subunit family protein
Lab Annot. clathrin adaptor complexes medium subunit protein
Mapman: 29.3.4.99 protein.targeting.secretory pathway.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G46630.2 11Arabidopsis thaliana041310010021 (13)_
AT1G60780.1 11Arabidopsis thaliana1E-125440426283 (25)M
AT1G10730.1 11Arabidopsis thaliana4E-12444042623 (3)M
Os02g46510.1 7Oryza sativa043894974 (4)_
Os01g50770.1 7Oryza sativa2E-12244141612 (2)M
Os05g46550.1 7Oryza sativa3E-12244241621 (1)M
Zm00001eb251180_P001 agpv5Zea mays043894970 (0)_
GRMZM2G331032_P02 3.21Zea mays043894975 (5)_
v1_GRMZM2G331032_P01 4a53Zea mays043694972 (2)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Adap_comp_sub(1) Clat_adaptor_s(1)
TargetP: Cytoplasm (Class 5 C0.015; M0.360; S0.121; _0.503)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 438 aa (-cTP 365)
Molecular Weight 49.32 kDA(-cTP )
PI 9.27(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2242Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2297Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 17317660(Plasma Membrane proteome)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help