PPDB

 The Plant Proteome Database

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AT5G46420.1   16S rRNA processing protein RimM family
Lab Annot. 16S rRNA processing protein RimM family, UDP-N-acetylglucosamine pyrophosphorylase
Mapman: 29.2.7* protein.synthesis.ribosome biogenesis
Curated Location plastid stroma (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G31070.1 11Arabidopsis thaliana5E-0812924500 (0)_
AT1G31070.2 11Arabidopsis thaliana1E-07129245011 (1)_
AT2G35020.1 11Arabidopsis thaliana4E-079627568 (1)_
Os05g49130.2 7Oryza sativa1E-7224146680 (0)C
Os05g49130.1 7Oryza sativa1E-7224146680 (0)C
Os08g10600.3 7Oryza sativa4E-0812921503 (3)_
GRMZM2G165694_P01 3.21Zea mays4E-142595396266 (46)C
v1_GRMZM2G165694_P01 4a53Zea mays4E-142595396229 (29)C
Zm00001eb296050_P001 agpv5Zea mays4E-14259539620 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PRC(1) RimM(2) UDPGP(1)
TargetP: Chloroplast (Class 1 C0.958; M0.059; S0.006; _0.019)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 653 aa (-cTP 601)
Molecular Weight 73.78 kDA(-cTP 67.88)
PI 5.61(-cTP 5.26)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
541Detail       leaf [A. thaliana] stroma (FPLC) >1 MDa stromawild-type
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2296Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help