PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G46210.1 cullin4

Lab Annot.

cullin4
Mapman: 29.5.11.4.3.3 protein.degradation.ubiquitin.E3.SCF.cullin

Curated Location

TAIR curated location: nucleus16844902

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G69670.1 11 Arabidopsis thaliana 3E-178 736 40 61 0 (0) _
AT1G69670.2 11 Arabidopsis thaliana 3E-178 736 40 61 0 (0) _
AT1G26830.1 11 Arabidopsis thaliana 7E-177 739 40 61 0 (0) _
Os03g57290.1 7 Oryza sativa 0 736 80 89 8 (8) C
Os02g51180.1 7 Oryza sativa 0 740 41 62 0 (0) _
Os04g55030.1 7 Oryza sativa 0 718 41 63 0 (0) _
Zm00001eb213380_P001 agpv5 Zea mays 0 737 79 88 0 (0) C
AC155496.2_FGP009 3.21 Zea mays 0 737 79 88 0 (0) C
Zm00001eb059990_P001 agpv5 Zea mays 0 750 78 87 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cullin(1) Cullin_Nedd8(2) DUF4778(1) HbrB(2) SF3a60_bindingd(2)
TargetP:	Chloroplast (Class 4 C0.613; M0.179; S0.054; _0.293)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	792 aa (-cTP 781)
Molecular Weight	91.47 kDA(-cTP 90.23)
PI	8.12(-cTP 7.68)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
2289	Detail								[A. thaliana]		Clp C1 TRAP
2297	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

18814325(cotyledons)
19546170(mature pollen grains)
19245862(nuclear phosphoproteins (seedlings & cell culture))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data