PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G46190.1   RNA-binding KH domain-containing protein

Lab Annot. KH domain-containing protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G46190.3 11Arabidopsis thaliana06441001000 (0)_
AT5G46190.4 11Arabidopsis thaliana06441001000 (0)_
AT5G46190.2 11Arabidopsis thaliana068993930 (0)_
Os08g10030.2 7Oryza sativa9E-12545346660 (0)_
Os08g10030.1 7Oryza sativa1E-12246445640 (0)_
Os10g35220.1 7Oryza sativa6E-6448331530 (0)_
GRMZM2G143568_P01 3.21Zea mays2E-174651446610 (10)_
Zm00001eb413550_P004 agpv5Zea mays2E-17465144660 (0)_
Zm00001eb413550_P002 agpv5Zea mays2E-17465144660 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: BMC(2) KH_1(5) KH_2(5) KH_4(5) KH_5(5) MOEP19(3)
TargetP: Cytoplasm (Class 4 C0.087; M0.276; S0.023; _0.664)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 644 aa (-cTP 618)
Molecular Weight 69.68 kDA(-cTP )
PI 8.35(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help