PPDB

 The Plant Proteome Database

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AT5G45900.1   ThiF family protein
Lab Annot. ATG7 (E1) - (ATG8/12 conjugation pathway)
Mapman: 29.5.2 protein.degradation.autophagy
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os01g42850.2 7Oryza sativa066947630 (0)_
Os01g42850.1 7Oryza sativa067047630 (0)_
GRMZM2G005304_P01 3.21Zea mays067548621 (0)_
Zm00001eb358160_P003 agpv5Zea mays067548620 (0)_
Zm00001eb358160_P004 agpv5Zea mays4E-18060948640 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: 2-Hacid_dh_C(2) ATG7_N(1) rRNA_methylase(1) Shikimate_DH(1) ThiF(1)
TargetP: Cytoplasm (Class 2 C0.143; M0.054; S0.124; _0.809)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 697 aa (-cTP 651)
Molecular Weight 76.52 kDA(-cTP )
PI 4.95(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2239Detail       seedlings [A. thaliana] total tissue gfs9
2240Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help