PPDB

 The Plant Proteome Database

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AT5G45530.1   transmembrane protein%2C putative (DUF594)
Lab Annot. unknown protein (DUF594)
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G45470.1 11Arabidopsis thaliana086653690 (0)_
AT5G45540.1 11Arabidopsis thaliana082150660 (0)_
AT5G45460.1 11Arabidopsis thaliana066851670 (0)_
Os07g01520.1 7Oryza sativa3E-11987833470 (0)_
Os10g20770.1 7Oryza sativa2E-10980633480 (0)S
Os11g42030.1 7Oryza sativa1E-6643535520 (0)S
Zm00001eb118320_P001 agpv5Zea mays2E-6146233450 (0)_
AC204515.4_FGP006 3.21Zea mays3E-5625346620 (0)_
v1_AC204515.4_FGP006 4a53Zea mays3E-5625346620 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF4220(1) DUF594(1)
TargetP: Secreted (Class 4 C0.005; M0.037; S0.722; _0.485)
Predotar:
Subcel. Location:
TM-HMM prediction: 4 TMs
Aramemnon: 7 TMs
TAT position:
Length 798 aa (-cTP 752)
Molecular Weight 92.27 kDA(-cTP )
PI 9.25(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
755Detail        [A. thaliana]  
1469Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 3)
1470Detail       leaf [A. thaliana] co-IP GST stroma clpc1 x clps (rep. 3)
1479Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 6)
1480Detail       leaf [A. thaliana] co-IP GST-ClpSmut stroma clpc1 x clps (rep. 6)

* For details about the exprimental sources click here.

Published Proteomics Data

 21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help