PPDB

The Plant Proteome Database

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AT5G45420.1   Duplicated homeodomain-like superfamily protein

Lab Annot. Duplicated homeodomain-like protein
Mapman: 27.3.25 RNA.regulation of transcription.MYB domain transcription factor family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G45420.3 11Arabidopsis thaliana03091001000 (0)_
AT5G45420.2 11Arabidopsis thaliana03091001000 (0)_
AT3G11450.1 11Arabidopsis thaliana6E-1923928466 (0)_
Os08g06240.1 7Oryza sativa6E-4825243570 (0)_
Os04g30890.1 7Oryza sativa2E-2119134480 (0)_
GRMZM2G001530_P01 3.21Zea mays2E-5825143600 (0)_
Zm00001eb415690_P002 agpv5Zea mays2E-5825143600 (0)_
Zm00001eb415690_P001 agpv5Zea mays2E-5825143600 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Myb_DNA-bind_6(2) Myb_DNA-binding(2) PAP2(1) PerC(2)
TargetP: Cytoplasm (Class 1 C0.039; M0.126; S0.028; _0.932)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 309 aa (-cTP 222)
Molecular Weight 34.36 kDA(-cTP )
PI 8.38(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

14506206(Plasma Membrane proteome)
14506206(plasma membrane (phosphorylated))
15308754(plasma membrane (phosphorylated))
16618929(ER-LOPIT-callus)
17317660(Plasma Membrane proteome)
19546170(mature pollen grains)
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help