PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G44840.1   Pectin lyase-like superfamily protein
Lab Annot.
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G44830.1 11Arabidopsis thaliana034187930 (0)_
AT4G35670.1 11Arabidopsis thaliana8E-15639057710 (0)S
AT5G27530.1 11Arabidopsis thaliana3E-14539153710 (0)_
Os07g10740.1 7Oryza sativa2E-8836839580 (0)S
Os01g07790.1 7Oryza sativa3E-8535741600 (0)_
Os07g10680.1 7Oryza sativa6E-8535042590 (0)S
GRMZM2G092746_P01 3.21Zea mays1E-9235041600 (0)S
v1_GRMZM2G092746_P01 4a53Zea mays1E-9235041600 (0)S
Zm00001eb061770_P001 agpv5Zea mays1E-9235041600 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Glyco_hydro_28(1) Pectate_lyase_3(3)
TargetP: Secreted (Class 1 C0.006; M0.010; S0.981; _0.111)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 391 aa (-cTP 341)
Molecular Weight 42.60 kDA(-cTP )
PI 8.39(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help