PPDB

 The Plant Proteome Database

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AT5G44520.1   NagB/RpiA/CoA transferase-like superfamily protein
Lab Annot. ribose 5-phosphate isomerase-related
Mapman: 1.3.10 PS.calvin cycle.Rib5P Isomerase
Curated Location plastid stroma (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G44520.2 11Arabidopsis thaliana02961001000 (0)C
AT3G04790.1 11Arabidopsis thaliana1E-2523932511153 (939)C
AT2G01290.1 11Arabidopsis thaliana2E-1823929494 (1)_
Os03g56869.1 7Oryza sativa4E-89229577314 (14)C
Os07g08030.1 7Oryza sativa3E-25220325167 (67)C
Os04g24140.1 7Oryza sativa4E-1823831492 (2)C
Zm00001eb213570_P002 agpv5Zea mays2E-8224652690 (0)C
GRMZM5G874903_P01 3.21Zea mays2E-82246526917 (17)C
v1_GRMZM2G166424_P03 4a53Zea mays2E-82246526918 (18)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Rib_5-P_isom_A(1)
TargetP: Chloroplast (Class 2 C0.829; M0.157; S0.062; _0.034)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 296 aa (-cTP 266) (-lTP 173)
Molecular Weight 32.16 kDA(-cTP 28.79)(-lTP 18.98)
PI 5.13(-cTP 4.76)(-lTP 4.632)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
180_181Detail       leaf [A. thaliana] chloroplast stromaclpr2-1
303Detail       leaf [A. thaliana] chloroplast stromawild-type
326Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
869Detail       leaf [A. thaliana] chloroplast stromawild-type
870Detail       leaf [A. thaliana] chloroplast stromawild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1456Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1457Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1458Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 1)
1459Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 2)
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1483Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1870Detail       Total leaf [A. thaliana] Stroma wild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2001Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2002Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2031Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2034Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2035Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2036Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2037Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2038Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2077Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2113Detail       leaf [A. thaliana] Stroma stromawt
2114Detail       leaf [A. thaliana] Stroma stromawt
2115Detail       leaf [A. thaliana] Stroma stromacGep
2116Detail       leaf [A. thaliana] Stroma stromacGep
2117Detail       leaf [A. thaliana] Stroma stromacGep
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
17216043(leaf)
20423899(chloroplast)
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data

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