PPDB

 The Plant Proteome Database

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AT5G44410.1   FAD-binding Berberine family protein
Lab Annot.
Mapman: 26.8 misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G44440.2 11Arabidopsis thaliana053872850 (0)_
AT5G44440.1 11Arabidopsis thaliana054072851 (1)S
AT4G20820.1 11Arabidopsis thaliana054062770 (0)C
Os06g35590.1 7Oryza sativa4E-15150346650 (0)S
Os06g35700.1 7Oryza sativa4E-15049946640 (0)S
Os06g35650.1 7Oryza sativa2E-14649845630 (0)S
Zm00001eb277710_P001 agpv5Zea mays1E-15352145640 (0)S
Zm00001eb384930_P001 agpv5Zea mays3E-15351545640 (0)S
GRMZM2G080907_P01 3.21Zea mays3E-153515456411 (11)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: BBE(1) DUF3937(2) FAD_binding_4(1)
TargetP: Secreted (Class 1 C0.007; M0.053; S0.954; _0.007)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 535 aa (-cTP 445)
Molecular Weight 61.27 kDA(-cTP )
PI 8.36(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help