PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G44390.1   FAD-binding Berberine family protein
Lab Annot. FAD-binding Berberine protein
Mapman: 26.8 misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
Curated Location plasma membrane
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G44400.1 11Arabidopsis thaliana054171834 (2)S
AT5G44380.2 11Arabidopsis thaliana054270840 (0)M
AT5G44380.1 11Arabidopsis thaliana0542708411 (11)S
Os06g35560.1 7Oryza sativa6E-13848746650 (0)S
Os06g35650.1 7Oryza sativa2E-13751642610 (0)S
Os06g35590.1 7Oryza sativa5E-13551142600 (0)S
Zm00001eb277710_P001 agpv5Zea mays5E-14752543630 (0)S
GRMZM2G403076_P01 3.21Zea mays2E-14652543630 (0)_
GRMZM2G031941_P01 3.21Zea mays7E-14552244620 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: BBE(1) FAD_binding_4(1)
TargetP: Secreted (Class 2 C0.032; M0.045; S0.825; _0.168)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 542 aa (-cTP 473)
Molecular Weight 61.48 kDA(-cTP )
PI 9.16(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 WallDB-E.Jamet(cell wall reference proteome)
21413152(Xylem-sap (BrassicaOleracea))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help