PPDB

The Plant Proteome Database

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AT5G44380.1   FAD-binding Berberine family protein

Lab Annot.
Mapman: 26.8 misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G44380.2 11Arabidopsis thaliana05411001000 (0)M
AT5G44390.1 11Arabidopsis thaliana054270840 (0)S
AT5G44400.1 11Arabidopsis thaliana053970824 (2)S
Os06g35650.1 7Oryza sativa9E-13751442610 (0)S
Os06g35560.1 7Oryza sativa2E-13451343620 (0)S
Os02g14090.1 7Oryza sativa1E-13352140610 (0)S
GRMZM2G031941_P01 3.21Zea mays2E-14451543620 (0)S
Zm00001eb384940_P001 agpv5Zea mays2E-14451543620 (0)S
v1_GRMZM2G031941_P01 4a53Zea mays2E-14451543620 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: BBE(1) FAD_binding_4(1)
TargetP: Secreted (Class 4 C0.032; M0.043; S0.439; _0.169)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 2 TMs
TAT position:
Length 541 aa (-cTP 471)
Molecular Weight 60.62 kDA(-cTP )
PI 9.51(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

14595688(Cell Wall proteome)
WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help