PPDB

 The Plant Proteome Database

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AT5G44360.1   FAD-binding Berberine family protein
Lab Annot.
Mapman: 26.8 misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G44360.2 11Arabidopsis thaliana05321001000 (0)S
AT4G20860.1 11Arabidopsis thaliana0511678110 (10)S
AT2G34790.1 11Arabidopsis thaliana2E-17054148660 (0)S
Os06g35650.1 7Oryza sativa8E-14151644630 (0)S
Os06g35700.1 7Oryza sativa3E-13953644610 (0)S
Os06g35550.1 7Oryza sativa1E-13850548640 (0)M
GRMZM2G031941_P01 3.21Zea mays6E-15050947630 (0)S
Zm00001eb384940_P001 agpv5Zea mays6E-15050947630 (0)S
v1_GRMZM2G031941_P01 4a53Zea mays6E-15050947630 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: BBE(2) FAD_binding_4(1)
TargetP: Secreted (Class 3 C0.058; M0.039; S0.631; _0.027)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 532 aa (-cTP 497)
Molecular Weight 60.50 kDA(-cTP )
PI 9.41(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help