PPDB

The Plant Proteome Database

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AT5G44200.1   CAP-binding protein 20

Lab Annot. CBP20 (CAP-BINDING PROTEIN 20); RNA binding
Mapman: 27.1.1 RNA.processing.splicing
Curated Location
TAIR curated location: mRNA cap complex0012427994
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G44200.2 11Arabidopsis thaliana02571001008 (2)M
AT3G46020.1 11Arabidopsis thaliana6E-108937570 (0)M
AT2G27330.1 11Arabidopsis thaliana2E-087634640 (0)M
Os02g39890.1 7Oryza sativa2E-11424371805 (5)_
Os02g39890.2 7Oryza sativa8E-10518180895 (5)_
Os01g31810.2 7Oryza sativa1E-099236540 (0)M
Zm00001eb246940_P001 agpv5Zea mays3E-11625670790 (0)_
GRMZM2G034804_P02 3.21Zea mays8E-11524071804 (4)_
v1_GRMZM2G034804_P02 4a53Zea mays8E-115240718014 (14)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF5721(1) RRM_1(1)
TargetP: Mitochondria (Class 5 C0.036; M0.677; S0.033; _0.568)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 257 aa (-cTP 226)
Molecular Weight 29.61 kDA(-cTP )
PI 6.87(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1682Detail        [A. thaliana] t1-t2xt2-t1/T1strepII

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help