PPDB

 The Plant Proteome Database

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AT5G43960.1   Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
Lab Annot. nuclear transport factor 2 (NTF2) protein / RNA recognition motif (RRM)-containing protein
Mapman: 29.3.1 protein.targeting.nucleus
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G43960.2 11Arabidopsis thaliana0391100100131 (62)_
AT3G25150.1 11Arabidopsis thaliana9E-57423345110 (8)_
AT3G25150.2 11Arabidopsis thaliana1E-55423345111 (9)C
Os02g03890.1 7Oryza sativa1E-80409415722 (22)M
Os02g03890.2 7Oryza sativa3E-80407425812 (12)M
Os04g43150.2 7Oryza sativa9E-5947133520 (0)_
Zm00001eb326230_P004 agpv5Zea mays3E-9041142590 (0)M
Zm00001eb326230_P003 agpv5Zea mays3E-9041142590 (0)M
GRMZM2G167932_P02 3.21Zea mays3E-904114259105 (46)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: NTF2(1) RRM_1(1) RRM_7(1)
TargetP: Cytoplasm (Class 5 C0.011; M0.489; S0.054; _0.541)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 450 aa (-cTP 443)
Molecular Weight 50.12 kDA(-cTP )
PI 4.91(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1547Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1548Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1550Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1551Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1552Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1553Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1569Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1572Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1759Detail       leaf [A. thaliana] total leaf tissue Col_0
1761Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2218Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2219Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2220Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2221Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2222Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2223Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2226Detail       leaf [A. thaliana] total leaf tissue wild-type
2236Detail       seedlings [A. thaliana] total tissue gfs9
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2240Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2242Detail       seedlings [A. thaliana] total tissue gfs9
2243Detail       seedlings [A. thaliana] total tissue gfs9
2244Detail       seedlings [A. thaliana] total tissue gfs9
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2262Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type
2263Detail       leaf [A. thaliana] stroma Clp Clp C1 trap

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

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