PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G43870.1   auxin canalization protein (DUF828)

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G43870.2 11Arabidopsis thaliana0385991000 (0)_
AT3G22810.1 11Arabidopsis thaliana046962740 (0)_
AT4G14740.1 11Arabidopsis thaliana047262750 (0)_
Os03g43510.1 7Oryza sativa1E-12441660730 (0)_
Os12g41140.1 7Oryza sativa1E-9947751650 (0)_
Os12g41140.3 7Oryza sativa4E-9847751650 (0)_
Zm00001eb218820_P003 agpv5Zea mays1E-12350351640 (0)_
v1_GRMZM2G078178_P01 4a53Zea mays1E-11947454680 (0)_
Zm00001eb218820_P001 agpv5Zea mays1E-11947454680 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Abhydrolase_9_N(1) Auxin_canalis(1) BAF1_ABF1(1) PH_12(1) PH_2(1)
TargetP: Cytoplasm (Class 4 C0.356; M0.136; S0.011; _0.607)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position:
Length 453 aa (-cTP 393)
Molecular Weight 48.64 kDA(-cTP )
PI 9.44(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help