PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G43745.1   ion channel POLLUX-like protein%2C putative (DUF1012)
Lab Annot. phosphotransferase-related (DUF1012)
Mapman: 35.1 not assigned.no ontology
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G02940.1 11Arabidopsis thaliana08198289140 (135)M
AT5G02940.2 11Arabidopsis thaliana084279860 (0)M
AT5G49960.1 11Arabidopsis thaliana8E-4667023471 (1)M
Os03g06720.1 7Oryza sativa074558754 (4)C
Os03g62650.1 7Oryza sativa5E-4866124450 (0)C
Os01g64980.1 7Oryza sativa8E-4466824460 (0)C
Zm00001eb004780_P002 agpv5Zea mays082955710 (0)C
Zm00001eb004780_P003 agpv5Zea mays083055710 (0)C
Zm00001eb004780_P001 agpv5Zea mays083055710 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Castor_Poll_mid(3) TrkA_C(2)
TargetP: Chloroplast (Class 5 C0.439; M0.283; S0.031; _0.012)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 817 aa (-cTP 762)
Molecular Weight 92.21 kDA(-cTP 86.11)
PI 9.15(-cTP 8.89)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1264Detail       leaf [A. thaliana] co-IP SHOOT1 (rep. 3) thylakoid membranewild-type
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1616Detail       Natural Senescence leaf [A. thaliana]  
1714Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek1k3
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 12938931(Total chloroplast envelope)
18431481(chloroplast)
19334764(plasma membrane (cell culture))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help