PPDB

 The Plant Proteome Database

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AT5G43060.1   Granulin repeat cysteine protease family protein
Lab Annot. papain-like cysteine protease (RD21B) - dual location cytosol & ER
Mapman: 29.5.3.1.1* protein.degradation.cysteine protease.CA.C1
Curated Location ER (Pubmed: 23398119 )
nucleus (Pubmed: 23398119 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G47128.1 11Arabidopsis thaliana04647889872 (456)S
AT3G19390.1 11Arabidopsis thaliana0431647714 (3)S
AT4G36880.1 11Arabidopsis thaliana8E-15334963766 (6)S
Os04g57440.1 7Oryza sativa0449607411 (11)S
Os04g57490.1 7Oryza sativa6E-16343756690 (0)S
Os04g55650.1 7Oryza sativa6E-133248778747 (47)_
GRMZM2G010435_P01 3.21Zea mays0439617422 (7)_
v1_GRMZM2G010435_P01 4a53Zea mays043961747 (7)_
Zm00001eb066830_P001 agpv5Zea mays043961740 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Granulin(2) Inhibitor_I29(1) Peptidase_C1(1) Peptidase_C1_2(2)
TargetP: Secreted (Class 1 C0.010; M0.022; S0.991; _0.065)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 463 aa (-cTP 450)
Molecular Weight 51.20 kDA(-cTP )
PI 5.86(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1619Detail        [A. thaliana] m48
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1930Detail       leaf [A. thaliana] total leaf tissue Col_0 Wild-type
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2236Detail       seedlings [A. thaliana] total tissue gfs9
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2242Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2288Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2304Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15215502(Vacuolar proteome)
17916636(root (NaCl stress))
19200160(flower-stage 12)
19546170(mature pollen grains)
18796151(cell wall (hypocotyl))
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19888209(leaves)
20166762(guard cells (Arabidopsis))
WallDB-E.Jamet(cell wall reference proteome)
21325567(root-proteome (wt & det3))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21413152(Xylem-sap (BrassicaOleracea))

Comparative Proteomics Data

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