PPDB

The Plant Proteome Database

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AT5G43050.1   YCF20-like protein (DUF565)

Lab Annot. YCF-20 protein (npq6)
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 20087601 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os04g41150.1 7Oryza sativa5E-6311681900 (0)C
Zm00001eb078970_P001 agpv5Zea mays2E-6214470790 (0)_
Zm00001eb078970_P002 agpv5Zea mays2E-6214470790 (0)_
GRMZM2G021107_P03 3.21Zea mays2E-6214470790 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ArgoL1(2) DUF565(1)
TargetP: Chloroplast (Class 2 C0.793; M0.021; S0.092; _0.066)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 3 TMs
TAT position:
Length 158 aa (-cTP 114)
Molecular Weight 17.80 kDA(-cTP 12.71)
PI 10.43(-cTP 9.66)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


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