PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G42970.1 Proteasome component (PCI) domain protein

Lab Annot.

COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)
Mapman: 30.11.1 signalling.light.COP9 signalosome

Curated Location

TAIR curated location: signalosome complex10521526,11019806

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G64760.3 11 Arabidopsis thaliana 7E-07 210 28 44 0 (0) _
AT5G64760.2 11 Arabidopsis thaliana 9E-07 210 28 44 18 (13) _
AT5G64760.1 11 Arabidopsis thaliana 1E-06 210 28 44 18 (13) _
Os03g10120.2 7 Oryza sativa 0 399 84 92 14 (14) _
Os03g10120.1 7 Oryza sativa 0 430 78 86 14 (14) _
Os03g10120.3 7 Oryza sativa 0 355 84 92 7 (7) _
v1_GRMZM2G153769_P01 4a53 Zea mays 0 399 83 92 19 (18) _
GRMZM2G153769_P01 3.21 Zea mays 0 399 83 92 42 (16) _
Zm00001eb008060_P002 agpv5 Zea mays 0 399 83 92 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CSN4_RPN5_eIF3a(1) PCI(2) PIN_3(1)
TargetP:	Cytoplasm (Class 2 C0.167; M0.148; S0.023; _0.854)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	397 aa (-cTP 390)
Molecular Weight	44.96 kDA(-cTP )
PI	4.87(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1871	Detail								Total leaf [A. thaliana]	Stroma	wild-type
2215	Detail								leaf [A. thaliana]	total leaf tissue	Clp P5 trap st
2262	Detail								leaf [A. thaliana]	stroma Clp	Clp C1 wild-type
2289	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2302	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2304	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

17407188(cotyledon)
19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data