PPDB

PPDB	The Plant Proteome Database

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AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein

Lab Annot.

Mapman: 27.1.1 RNA.processing.splicing

Curated Location

TAIR curated location: nucleus16407443

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G42820.2 11 Arabidopsis thaliana 0 283 100 100 0 (0) _
AT1G27650.1 11 Arabidopsis thaliana 6E-141 286 80 84 0 (0) _
AT1G27650.2 11 Arabidopsis thaliana 2E-99 235 76 81 0 (0) _
Os09g31482.1 7 Oryza sativa 3E-132 291 68 76 2 (2) _
Os09g31482.3 7 Oryza sativa 3E-132 291 68 76 2 (2) _
Os05g48960.3 7 Oryza sativa 4E-123 185 86 95 2 (2) _
Zm00001eb116590_P001 agpv5 Zea mays 1E-143 304 71 78 0 (0) _
v1_GRMZM2G025014_P02 4a53 Zea mays 1E-143 304 71 78 18 (18) _
v1_GRMZM2G025014_P03 4a53 Zea mays 1E-143 304 71 78 18 (18) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RRM_1(1) Torus(2) zf-CCCH(2) zf-CCCH_3(2) zf-CCCH_4(2) zf_CCCH_4(2)
TargetP:	Cytoplasm (Class 3 C0.348; M0.121; S0.028; _0.769)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	283 aa (-cTP 235)
Molecular Weight	33.23 kDA(-cTP )
PI	9.67(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data