PPDB

 The Plant Proteome Database

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AT5G42780.1   homeobox protein 27
Lab Annot.
Mapman: 27.3.80 RNA.regulation of transcription.zf-HD
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G24660.1 11Arabidopsis thaliana2E-2917938510 (0)_
AT4G24660.2 11Arabidopsis thaliana4E-2917738500 (0)_
AT2G18350.1 11Arabidopsis thaliana7E-2920737510 (0)_
Os05g50310.1 7Oryza sativa8E-2719933510 (0)_
Os08g37400.1 7Oryza sativa6E-2622332460 (0)_
Os09g29130.1 7Oryza sativa1E-1822030450 (0)_
GRMZM2G414844_P01 3.21Zea mays9E-2818235520 (0)_
v1_GRMZM2G414844_P01 4a53Zea mays9E-2818235527 (7)_
Zm00001eb296830_P001 agpv5Zea mays9E-2818235520 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ZF-HD_dimer(2)
TargetP: Cytoplasm (Class 2 C0.118; M0.101; S0.055; _0.897)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 242 aa (-cTP 208)
Molecular Weight 27.97 kDA(-cTP )
PI 8.70(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
2117Detail       leaf [A. thaliana] Stroma stromacGep

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help