PPDB

 The Plant Proteome Database

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AT5G42660.1   DNA-directed RNA polymerase subunit beta (DUF616)
Lab Annot. Protein of unknown function (DUF616)
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G02910.2 11Arabidopsis thaliana6E-7632842570 (0)_
AT2G02910.1 11Arabidopsis thaliana6E-7632842570 (0)_
AT1G34550.2 11Arabidopsis thaliana6E-7130541570 (0)M
Os01g54530.1 7Oryza sativa042961740 (0)C
Os03g55920.1 7Oryza sativa040961770 (0)C
Os11g09170.1 7Oryza sativa4E-71313415810 (10)C
GRMZM2G043464_P01 3.21Zea mays4E-18046257720 (0)C
Zm00001eb153240_P002 agpv5Zea mays4E-18046257720 (0)C
v1_GRMZM2G043464_P01 4a53Zea mays4E-18046257720 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CagY_M(1) DUF616(1)
TargetP: Chloroplast (Class 5 C0.721; M0.046; S0.013; _0.565)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 463 aa (-cTP 440)
Molecular Weight 53.06 kDA(-cTP 50.45)
PI 9.52(-cTP 9.61)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 17272265(ubiquinated proteins (suspension cells))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help