PPDB

PPDB	The Plant Proteome Database

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AT5G42220.1 Ubiquitin-like superfamily protein

Lab Annot.

ubiquitin protein
Mapman: 29.2.3 protein.synthesis.initiation

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G42220.2 11 Arabidopsis thaliana 0 879 100 100 0 (0) _
AT5G25270.1 11 Arabidopsis thaliana 4E-56 454 35 50 1 (0) _
AT1G53950.1 11 Arabidopsis thaliana 1E-11 80 41 67 0 (0) _
Os08g19830.3 7 Oryza sativa 2E-64 495 35 50 0 (0) _
Os08g19830.1 7 Oryza sativa 7E-57 469 35 50 0 (0) _
Os07g31540.1 7 Oryza sativa 6E-45 356 36 53 13 (13) _
Zm00001eb198450_P001 agpv5 Zea mays 9E-108 955 33 49 0 (0) _
Zm00001eb198450_P002 agpv5 Zea mays 2E-107 956 33 49 0 (0) _
Zm00001eb198450_P003 agpv5 Zea mays 8E-77 493 38 53 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Rad60-SLD(2) Rad60-SLD_2(1) TBK1_ULD(1) ubiquitin(1) Ubiquitin_2(1)
TargetP:	Cytoplasm (Class 4 C0.573; M0.033; S0.063; _0.806)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	879 aa (-cTP 865)
Molecular Weight	92.55 kDA(-cTP )
PI	5.07(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1175	Detail								leaf [A. thaliana]	co-IP RH3 stroma	wild-type
1176	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data