PPDB

PPDB	The Plant Proteome Database

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AT5G42200.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G49220.1 11 Arabidopsis thaliana 1E-17 152 31 48 0 (0) _
AT1G49210.1 11 Arabidopsis thaliana 6E-17 145 31 48 0 (0) _
AT1G20823.1 11 Arabidopsis thaliana 1E-16 145 33 49 0 (0) _
Os12g24490.1 7 Oryza sativa 3E-17 81 38 58 0 (0) _
Os11g02424.1 7 Oryza sativa 4E-16 151 35 49 0 (0) C
Os06g34620.1 7 Oryza sativa 4E-16 147 31 48 0 (0) _
Zm00001eb250960_P001 agpv5 Zea mays 9E-17 147 34 49 0 (0) _
v1_GRMZM2G057789_P01 4a53 Zea mays 9E-17 147 34 49 0 (0) _
GRMZM2G057789_P01 3.21 Zea mays 9E-17 147 34 49 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF1272(1) FANCL_C(1) Myc_target_1(1) PHD(2) Prok-RING_1(2) Prok-RING_4(1) zf-AN
TargetP:	Cytoplasm (Class 2 C0.111; M0.033; S0.121; _0.768)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	163 aa (-cTP 146)
Molecular Weight	17.76 kDA(-cTP )
PI	7.51(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data