PPDB

 The Plant Proteome Database

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AT5G41960.1   zinc finger matrin-type protein
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G41960.2 11Arabidopsis thaliana3E-10315098980 (0)C
Os04g49610.1 7Oryza sativa6E-5719549630 (0)M
Os04g49610.2 7Oryza sativa4E-5619149640 (0)M
GRMZM2G322634_P01 3.21Zea mays3E-5518048657 (7)C
Zm00001eb428160_P001 agpv5Zea mays3E-5518048650 (0)C
Zm00001eb428160_P002 agpv5Zea mays7E-398565840 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM:
TargetP: Chloroplast (Class 1 C0.966; M0.086; S0.010; _0.014)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 1 TMs
Aramemnon: 4 TMs
TAT position:
Length 217 aa (-cTP 160)
Molecular Weight 24.07 kDA(-cTP 17.96)
PI 5.95(-cTP 4.71)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1613Detail       Natural Senescence leaf [A. thaliana]  
1614Detail       Natural Senescence leaf [A. thaliana]  
1615Detail       Natural Senescence leaf [A. thaliana]  
1617Detail        [A. thaliana] m48
1675Detail       Rosettes [A. thaliana]  
1676Detail       Rosettes [A. thaliana]  
1713Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek1k3
1987Detail       leaf [A. thaliana] plastid Prep1_Prep2
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help